PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000953.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 693aa    MW: 79963.1 Da    PI: 6.5081
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000953.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.31.3e-2372161390
                     FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleH 85 
                              Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke     ++w+v+++++ H
  Itr_sc000953.1_g00002.1  72 YSSFARKNGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKELvdgVAQWYVSQFSNVH 156
                              9*******************8888.******************************************998766789********** PP

                     FAR1  86 nHela 90 
                              nHel 
  Itr_sc000953.1_g00002.1 157 NHELL 161
                              ***96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-2172161IPR004330FAR1 DNA binding domain
PfamPF105512.8E-24293384IPR018289MULE transposase domain
PROSITE profilePS5096610.287565600IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-7567598IPR007527Zinc finger, SWIM-type
SMARTSM005759.9E-4575602IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MAAKTLNNIW IQRQQCPCGD WKCYVKCDGD DQVTSGAQMA KSGLTSFVSQ ENICTPYVGQ  60
IFKSDDEAYE SYSSFARKNG FSIRKARSTE SQNLGVYRRD FVCYRSGFNQ PRKKANVEHP  120
RDRKSVRCGC DAKLYLTKEL VDGVAQWYVS QFSNVHNHEL LEDDQVRLLP AYRKIQEPDQ  180
ERILLLSKAG FPVNRIVKVL ELEKGVRPGQ LPFIEKDVRN FVRTCKKTVQ ENDALITEKR  240
ENDLFDLLES CKAAKERDEQ FAYKYTTDGN GKVENIAWVY GDAVRAAAIF GDVVTFDTTY  300
RSITYNMLLG VWFAIDNHGK AIFLGCVLLQ DETSQSFSWA LQSFIHCMEG RQPETIVTDL  360
DSELRDAIAN EMPNTKHVIC LWKILPKLSS WFSTPLGVQY AEFKSEFDII SQLENVDEFE  420
HQWNHLVARY GLGSDKHIAL LFAYRMSWPI SYIRNFFLAH SLTPEYSKLV ETFLKHILSE  480
QSNLQLFFEQ VSVSISFMNH SKEKLIYTPI KTYMPLEEHA RSILTPYAFS AMQHEIVLSM  540
QYSVTEMPNG SYLVRHYKKM EGECFVIWIP ENEQVHCSCK EFEHSGILCR HCLRVLLIKN  600
YFQIPGKYFP RRWLMESSLI PFGDSIIQTN TDEYSQAFHA LTASIFSESL ISKERASYVD  660
RELRQLLEHV QSMPVVEEVT LSSVPNNVSE TQG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357637.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_006357636.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_006357635.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A0V0IQ620.0A0A0V0IQ62_SOLCH; Putative FAR1-related sequence 10-like
STRINGSolyc07g045520.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75321927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10